substrata
Getting Started
Installation
Quick Start
Requirements
Command-line usage of
substrata
Decimation of PLY files
PLY file preview (head)
Visual assessment of scalebars
Composite views
Orientation and scaling
FireFish alignment
Camera video creation
Z-intercepts calculation
Point cloud alignment
Image matches
Classifier training
Tutorials
Scaling and orientation with
substrata
Loading a point cloud
Scaling the point cloud
Orientation
Transferring 3D annotations between different reconstructions of the same pointcloud
Loading in the old annotations and exporting image matches
Loading in the new pointcloud and camera files and importing the old annotations based on 2D image coordinates
Topographic position index (TPI) and terrain ruggedness index (TRI)
Load in the pointcloud and annotations and scale/orient using predefined saved world transform
Prepare for measurements and visualizations
Calculate and visualize topographic position index (TPI) and terrain ruggedness index (TRI)
Different parameter options
Comparison of different parameter options - different neighborhood size (=annulus width)
Comparison of different parameter options - z or mean z from inner
Comparison of different parameter options - rasterization
Comparison of different parameter options - with or without coral colony
Comparison with roughness parameter
API Reference
API Reference
Core Modules
Analysis and Processing
Visualization
Configuration and Utilities
setup_logging()
tqdm_joblib()
Command Line Interface
substrata
Index
Index
M
|
S
|
T
M
module
substrata.logging
substrata.settings
S
setup_logging() (in module substrata.logging)
substrata.logging
module
substrata.settings
module
T
tqdm_joblib() (in module substrata.logging)